Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aatA | aatA-2 | Atu2196 | Atu4278 | Aspartate aminotransferase A. | Aspartate aminotransferase A. | 0.903 |
aatA | cysK | Atu2196 | Atu0312 | Aspartate aminotransferase A. | Cysteine synthase. | 0.910 |
aatA | cysK-2 | Atu2196 | Atu1217 | Aspartate aminotransferase A. | Cysteine synthase. | 0.910 |
aatA | dfp | Atu2196 | Atu0316 | Aspartate aminotransferase A. | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.841 |
aatA-2 | aatA | Atu4278 | Atu2196 | Aspartate aminotransferase A. | Aspartate aminotransferase A. | 0.903 |
aatA-2 | cysK | Atu4278 | Atu0312 | Aspartate aminotransferase A. | Cysteine synthase. | 0.910 |
aatA-2 | cysK-2 | Atu4278 | Atu1217 | Aspartate aminotransferase A. | Cysteine synthase. | 0.910 |
aatA-2 | dfp | Atu4278 | Atu0316 | Aspartate aminotransferase A. | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.841 |
coaD | dfp | Atu1681 | Atu0316 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.967 |
coaD | panC | Atu1681 | Atu3482 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.460 |
coaD | panK | Atu1681 | Atu0037 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Pantothenate kinase. | 0.923 |
coaD | ribF | Atu1681 | Atu0685 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Riboflavin biosynthesis bifunctional protein; Belongs to the ribF family. | 0.798 |
cysK | aatA | Atu0312 | Atu2196 | Cysteine synthase. | Aspartate aminotransferase A. | 0.910 |
cysK | aatA-2 | Atu0312 | Atu4278 | Cysteine synthase. | Aspartate aminotransferase A. | 0.910 |
cysK | cysK-2 | Atu0312 | Atu1217 | Cysteine synthase. | Cysteine synthase. | 0.916 |
cysK | dfp | Atu0312 | Atu0316 | Cysteine synthase. | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.851 |
cysK | dut | Atu0312 | Atu0314 | Cysteine synthase. | Deoxyuridine 5; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.408 |
cysK-2 | aatA | Atu1217 | Atu2196 | Cysteine synthase. | Aspartate aminotransferase A. | 0.910 |
cysK-2 | aatA-2 | Atu1217 | Atu4278 | Cysteine synthase. | Aspartate aminotransferase A. | 0.910 |
cysK-2 | cysK | Atu1217 | Atu0312 | Cysteine synthase. | Cysteine synthase. | 0.916 |
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