Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu0393ABC transporter, membrane spanning protein. (273 aa)    
Predicted Functional Partners:
Atu0392
ABC transporter, membrane spanning protein.
 
   0.981
Atu0394
ABC transporter, substrate binding protein (sugar).
 
   0.950
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
   0.942
Atu1403
ABC transporter, membrane spanning protein.
 
   0.844
Atu3150
ABC transporter, membrane spanning protein (sugar).
 
   0.842
Atu3101
ABC transporter, membrane spanning protein (sugar).
 
   0.840
Atu4251
ABC transporter, membrane spanning protein (sugar).
 
   0.839
Atu4209
ABC transporter, membrane spanning protein (sugar).
  
   0.838
malF-2
ABC transporter, membrane spanning protein (sugar).
 
   0.836
Atu2506
ABC transporter, membrane spanning protein (sugar).
 
   0.833
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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