STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0394ABC transporter, substrate binding protein (sugar). (430 aa)    
Predicted Functional Partners:
Atu0393
ABC transporter, membrane spanning protein.
 
   0.950
Atu0392
ABC transporter, membrane spanning protein.
 
   0.949
Atu0395
Conserved hypothetical protein.
 
     0.885
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
   0.822
ugpA-3
ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate).
  
   0.667
Atu4421
ABC transporter, substrate binding protein (spermidine/putrescine).
  
  
 0.617
ugpE-2
ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate); Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
   0.611
Atu4209
ABC transporter, membrane spanning protein (sugar).
  
   0.597
ugpE
ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate); Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
   0.594
ugpA-2
ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate).
  
   0.588
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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