Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fbpA1ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily. (349 aa)    
Predicted Functional Partners:
fbpA3
ABC transporter, membrane spanning protein.
 
 0.980
Atu0613
ABC transporter, membrane spanning protein.
 
 0.947
Atu4579
ABC transporter, membrane spanning protein.
 
 0.902
Atu2013
ABC transporter, membrane spanning protein.
 
 0.880
afuB
ABC transporter, membrane spanning protein (iron).
 
 0.870
fbpA
ABC transporter, substrate binding protein (iron).
 
  
 0.842
Atu4570
ABC transporter, membrane spanning protein.
 
 
 0.770
Atu4571
ABC transporter, membrane spanning protein.
 
 
 0.724
Atu0202
ABC transporter, substrate binding protein (iron).
 
  
 0.641
Atu4423
ABC transporter, membrane spanning protein.
 
 
 0.635
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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