STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0409Ferrichrome iron receptor. (729 aa)    
Predicted Functional Partners:
fecR
Two component sensor kinase.
 
 
 0.891
Atu3386
Two component sensor kinase.
 
 
 0.873
Atu2287
Outer membrane heme receptor.
  
  
 0.717
Atu0410
Transcriptional regulator, AraC family.
 
   
 0.675
tonB
tonB protein.
 
 
 0.668
Atu3687
TonB-dependent receptor.
 
  
 0.663
bfrA
Exogenous ferric siderophore receptor.
  
  
0.617
fhuD
ABC transporter, substrate binding protein (ferrichrome).
 
   
 0.606
tolA
Conserved hypothetical protein.
  
 
 0.601
fhuC
ABC transporter, nucleotide binding/ATPase protein (ferrichrome).
 
  
 0.586
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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