Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu0410Transcriptional regulator, AraC family. (287 aa)    
Predicted Functional Partners:
Atu0409
Ferrichrome iron receptor.
 
   
 0.675
glxA
Transcriptional regulator, AraC family.
  
   0.618
Atu8119
Conserved hypothetical protein.
       0.592
Atu4644
Transcriptional regulator, AraC family.
  
     0.572
Atu3152
Transcriptional regulator, AraC family.
  
     0.554
Atu3227
Transcriptional regulator, AraC family.
  
     0.470
Atu4575
Transcriptional regulator, AraC family.
  
     0.468
pobR
Transcriptional regulator, AraC family.
  
   0.448
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.415
Atu4132
Transcriptional regulator, AraC family.
  
     0.415
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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