STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0410Transcriptional regulator, AraC family. (287 aa)    
Predicted Functional Partners:
Atu0409
Ferrichrome iron receptor.
 
   
 0.666
glxA
Transcriptional regulator, AraC family.
  
   0.621
Atu4644
Transcriptional regulator, AraC family.
  
     0.572
Atu3152
Transcriptional regulator, AraC family.
  
     0.554
Atu8119
Conserved hypothetical protein.
       0.539
Atu3227
Transcriptional regulator, AraC family.
  
     0.470
Atu4575
Transcriptional regulator, AraC family.
  
     0.468
pobR
Transcriptional regulator, AraC family.
  
   0.445
Atu4132
Transcriptional regulator, AraC family.
  
     0.415
Atu3134
Transcriptional regulator, AraC family.
  
     0.409
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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