Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu0443Putative phage repressor. (231 aa)    
Predicted Functional Partners:
Atu0444
Conserved hypothetical protein.
  
  
 0.620
Atu3206
Conserved hypothetical protein.
  
     0.581
Atu0445
Hypothetical protein.
  
    0.537
Atu2193
Conserved hypothetical protein.
  
     0.505
strB
Streptomycin resistance protein.
  
     0.501
Atu8096
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
     0.473
Atu3652
Conserved hypothetical protein.
  
     0.463
Atu4584
Transcriptional regulator, TetR family.
  
   
 0.461
Atu1995
Conserved hypothetical protein.
  
     0.457
amsJ
Exopolysaccharide synthesis protein.
  
     0.456
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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