STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0479ABC transporter, substrate binding protein (amino acid). (253 aa)    
Predicted Functional Partners:
Atu2364
ABC transporter, membrane spanning protein.
 
 
 0.778
Atu1880
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.773
Atu3359
ABC transporter, membrane spanning protein (amino acid).
 
 
 0.761
Atu3358
ABC transporter, membrane spanning protein (amino acid).
  
   0.756
Atu4234
ABC transporter, membrane spanning protein (amino acid).
  
   0.750
Atu1881
ABC transporter, membrane spanning protein (amino acid).
 
  
 0.749
Atu2363
ABC transporter, membrane spanning protein.
 
  
 0.749
Atu4754
ABC transporter, membrane spanning protein (amino acid).
  
   0.748
Atu4281
ABC transporter, membrane spanning protein (amino acid).
  
   0.747
Atu4537
ABC transporter, membrane spanning protein (amino acid).
  
   0.743
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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