STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0482Polysaccharide deacetylase. (250 aa)    
Predicted Functional Partners:
exoQ
Exopolysaccharide production protein.
 
   
 0.836
Atu0480
Polysaccharide biosynthesis protein.
 
   
 0.698
exoH
Succinoglycan biosynthesis protein.
 
     0.629
exoQ-2
Exopolysaccharide production protein.
 
   
 0.611
Atu1052
Conserved hypothetical protein.
  
     0.593
Atu2220
Conserved hypothetical protein.
 
  
 0.586
Atu2177
Conserved hypothetical protein.
  
   
 0.530
exoQ-3
Exopolysaccharide production protein.
 
   
 0.511
exoM
UDP-hexose transferase.
 
   
 0.506
Atu2358
Acetyltransferase.
 
   
 0.500
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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