STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0484Two component response regulator. (216 aa)    
Predicted Functional Partners:
Atu0527
Two component sensor kinase/response regulator hybrid.
 
 
 0.908
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.709
Atu3318
Transcriptional regulator, LuxR family.
  
     0.672
Atu4034
Two component sensor kinase.
 
 
 0.557
drrA
Two component response regulator.
  
 
 0.553
c1
Bacteriophage repressor protein C1; Belongs to the peptidase S24 family.
  
    0.530
Atu0157
ABC transporter, substrate binding protein.
  
   
 0.514
Atu2187
Transcriptional regulator, ArsR family.
  
  
 0.514
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
0.501
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
   
   0.494
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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