Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0495Conserved hypothetical protein. (242 aa)    
Predicted Functional Partners:
lhr
Large atp-dependant helicase-related protein.
 
    0.957
Atu0839
Conserved hypothetical protein.
 
     0.822
Atu0840
ATP-dependent DNA ligase.
 
     0.821
Atu0049
Conserved hypothetical protein.
  
     0.676
Atu0772
Conserved hypothetical protein.
  
     0.504
Atu1038
Two component response regulator.
  
     0.474
Atu1758
Conserved hypothetical protein.
  
     0.464
Atu8129
Conserved hypothetical protein.
 
    0.451
Atu1987
Two component response regulator.
  
     0.446
Atu1302
Conserved hypothetical protein.
  
     0.416
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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