STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaEphaE protein. (161 aa)    
Predicted Functional Partners:
phaA
pH adaption potassium efflux system protein.
 
 
 0.999
phaD
pH adaption potassium efflux system protein.
 
 0.997
phaG
Potassium efflux system protein.
 
 
 0.996
phaF
PH Adaption potassium efflux system.
 
 
 0.996
phaC
pH adaption potassium efflux system protein.
 
 
 0.996
mnhA
Na+/H+ antiporter.
 
 
 0.992
mnhC
Na+/H+ antiporter.
 
 
 0.966
mnhF
Na+/H+ antiporter.
 
 
 0.944
mnhB
Na+/H+ antiporter.
 
 
 0.942
mnhD
Na+/H+ antiporter.
 
 
 0.930
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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