Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu0538Conserved hypothetical protein. (146 aa)    
Predicted Functional Partners:
dcd
2'-deoxycytidine 5'-triphosphate deaminase.
 
     0.790
murA
UDP-N-acetylglucosamine; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
    0.761
Atu1052
Conserved hypothetical protein.
  
     0.744
Atu0536
Conserved hypothetical protein; Belongs to the UPF0262 family.
 
     0.741
actS
Two component sensor kinase.
  
     0.740
hisS-1
histidyl-tRNA synthetase.
  
     0.719
Atu0388
Two component sensor kinase.
  
     0.715
Atu0535
Conserved hypothetical protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
     0.697
actR
Two component response regulator.
  
     0.682
Atu2683
Conserved hypothetical protein.
  
     0.667
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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