STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0573Transcriptional regulator. (223 aa)    
Predicted Functional Partners:
flgL
Flagellar hook-associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.880
flaF
FLAF protein.
 
  
 0.872
flgK
Flagellar hook associated protein.
 
  
 0.868
flbT
FlbT post-transcriptional regulator of flagellin; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation.
 
  
 0.866
Atu0570
Chemotaxis protein.
 
   
 0.865
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.824
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.820
motB
Flagellar motor protein, PAL/OmpA family.
 
  
 0.820
Atu0572
Conserved hypothetical protein.
 
   
 0.817
fliL
Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.809
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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