Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
aglGABC transporter, membrane spanning protein. (386 aa)    
Predicted Functional Partners:
aglF
ABC transporter, membrane spanning protein.
 
 0.997
aglE
ABC transporter, substrate binding protein (alpha-glucoside).
 
 0.994
aglK
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
 0.992
aglA
Alpha-glucosidase.
 
  
 0.945
Atu0391
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
   
 0.919
Atu3349
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
  
  0.882
Atu3021
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
  0.879
Atu3281
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
  
  0.878
Atu1401
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
  
  0.877
Atu2508
ABC transporter, nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
   
  0.861
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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