Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Atu0672Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
Atu0671
Conserved hypothetical protein.
 
     0.869
Atu3829
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.611
Atu3951
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.500
ptxR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.492
Atu4872
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.473
Atu2191
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.464
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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