STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0674Conserved hypothetical protein. (89 aa)    
Predicted Functional Partners:
Atu0675
Conserved hypothetical protein.
 
   
 0.961
Atu0935
Conserved hypothetical protein.
 
 
 0.924
Atu2018
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.848
Atu0673
Hypothetical protein.
       0.804
Atu1735
Hypothetical protein.
 
 
 
 0.753
Atu0465
Transcriptional regulator.
   
 
 0.707
Atu2017
Conserved hypothetical protein.
 
   
 0.622
hisS-1
histidyl-tRNA synthetase.
       0.555
pemK
PemK protein.
 
   
 0.553
Atu3014
Conserved hypothetical protein.
 
   
 0.543
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.