STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0684Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
Atu1052
Conserved hypothetical protein.
 
  
 0.723
Atu3572
Transcriptional regulator, HTH family.
  
     0.704
Atu0361
Transcriptional regulator.
  
     0.670
ribF
Riboflavin biosynthesis bifunctional protein; Belongs to the ribF family.
  
    0.662
envZ
Two component sensor kinase.
  
   0.622
Atu1779
Conserved hypothetical protein.
  
     0.596
hisS-1
histidyl-tRNA synthetase.
 
    0.584
dcd
2'-deoxycytidine 5'-triphosphate deaminase.
 
    0.581
Atu3613
Conserved hypothetical protein.
 
     0.578
holC
DNA polymerase III subunit chi.
  
     0.526
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.