Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Atu0684Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis bifunctional protein; Belongs to the ribF family.
       0.851
Atu3572
Transcriptional regulator, HTH family.
  
     0.704
Atu1052
Conserved hypothetical protein.
 
  
 0.694
Atu0361
Transcriptional regulator.
  
     0.670
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
    
   0.669
envZ
Two component sensor kinase.
  
 
   0.618
Atu1779
Conserved hypothetical protein.
  
     0.596
hisS-1
histidyl-tRNA synthetase.
 
    0.594
dcd
2'-deoxycytidine 5'-triphosphate deaminase.
 
    0.591
Atu3613
Conserved hypothetical protein.
 
     0.577
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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