STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0726Ring hydroxylating dioxygenase, alpha-subunit. (414 aa)    
Predicted Functional Partners:
Atu0727
Ferredoxin I.
 
 0.999
Atu1632
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
  
 
 0.912
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
   
 
 0.904
stcD
N-methylproline demethylase.
 
 
 0.886
soxD-3
Sarcosine oxidase delta subunit.
 
    0.814
soxD
Sarcosine oxidase delta subunit.
 
    0.812
soxG
Sarcosine oxidase gamma subunit.
 
    0.770
soxA
Sarcosine oxidase alpha subunit.
 
  
 0.760
soxA-3
Sarcosine oxidase alpha subunit.
 
  
 0.758
Atu1196
Naphthalene 1,2-dioxygenase.
 
  
 0.749
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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