STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJRibosomal-protein (S5)-alanine N-acetyltransferase. (199 aa)    
Predicted Functional Partners:
Atu0784
Conserved hypothetical protein.
     
 0.805
Atu4764
Acetyltransferase.
  
   
 0.670
Atu0538
Conserved hypothetical protein.
  
     0.606
Atu0786
Peptidase, family M16; Belongs to the peptidase M16 family.
  
    0.604
thrC
Threonine synthase.
       0.569
Atu0388
Two component sensor kinase.
  
     0.496
Atu1052
Conserved hypothetical protein.
 
     0.481
Atu2783
Acetyltransferase.
  
   
 0.468
Atu0788
Conserved hypothetical protein.
       0.461
dcd
2'-deoxycytidine 5'-triphosphate deaminase.
 
    0.458
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.