STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0802Conserved hypothetical protein. (323 aa)    
Predicted Functional Partners:
Atu4003
Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
    
 0.912
Atu0903
Conserved hypothetical protein.
  
  
 
0.910
Atu2307
Monooxygenase.
  
    0.609
Atu1045
Conserved hypothetical protein.
 
  
 0.600
lguL
Lactoylglutathione lyase.
  
  
 0.541
Atu1102
Conserved hypothetical protein.
 
     0.492
Atu1516
Conserved hypothetical protein.
     
 0.487
gloA
Lactoylglutathione lyase.
   
  
 0.482
Atu2344
Lactoylglutathione lyase.
   
  
 0.482
gloA-2
Lactoylglutathione lyase.
   
  
 0.482
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.