Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu0807Metallo-beta-lactamase superfamily protein. (302 aa)    
Predicted Functional Partners:
Atu1301
Conserved hypothetical protein.
  
 
   0.633
Atu0698
Conserved hypothetical protein.
  
     0.482
Atu3763
Conserved hypothetical protein.
 
    0.473
Atu0049
Conserved hypothetical protein.
  
     0.446
Atu4874
Hypothetical protein.
  
     0.446
Atu0415
Conserved hypothetical protein.
 
  
 0.435
Atu0951
Large terminase phage packaging protein.
  
     0.429
Atu0809
Hypothetical protein.
       0.409
Atu0810
Hypothetical protein.
       0.409
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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