STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0809Hypothetical protein. (103 aa)    
Predicted Functional Partners:
Atu0810
Hypothetical protein.
  
 
 0.930
Atu1079
Hypothetical protein.
  
 
 0.701
Atu1312
Hypothetical protein.
  
 
 0.665
Atu1783
Conserved hypothetical protein.
  
 
 0.610
Atu4460
Conserved hypothetical protein.
  
 
 0.610
Atu8138
Conserved hypothetical protein.
  
 
 0.450
mqo
Malate:quinone oxidoreductase.
       0.449
Atu4884
Conserved hypothetical protein.
  
 
 0.429
Atu1511
Conserved hypothetical protein.
  
 
 0.416
Atu0807
Metallo-beta-lactamase superfamily protein.
       0.409
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.