STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0843P type cation (metal) transporter, ATPase component. (905 aa)    
Predicted Functional Partners:
Atu0937
Copper transporting ATPase.
 
 
0.988
Atu0890
Conserved hypothetical protein.
 
  
 0.762
fixI
Nitrogen fixation protein FixI.
 
 
0.714
Atu1203
Hypothetical protein.
 
 
 0.706
Atu1195
Heavy-metal transporting P-type ATPase.
 
 
0.698
copA
Multicopper oxidase.
 
 
 0.688
nirK
Nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
  
 
 0.646
Atu2274
Cation efflux system protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 0.634
Atu2124
Transcriptional regulator, ArsR family.
 
  
 0.629
Atu0891
Cation efflux system protein.
  
  
 0.628
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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