STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCPutative carboxymuconolactone decarboxylase. (177 aa)    
Predicted Functional Partners:
pcaD
Beta-ketoadipate enol-lactone hydrolase.
 
 
 0.967
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.955
pcaC-2
Carboxymuconolactone decarboxylase.
  
  
 
0.925
Atu0859
Conserved hypothetical protein.
 
     0.819
Atu0857
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.818
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.807
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.790
pobA
4-hydroxybenzoate hydroxylase.
 
   
 0.761
pcaR
Transcriptional regulator, IclR family.
 
   
 0.606
pcaQ
Transcriptional regulator, LysR family; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate.
  
   
 0.580
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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