Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0890Conserved hypothetical protein. (90 aa)    
Predicted Functional Partners:
Atu0891
Cation efflux system protein.
 
  
 0.967
Atu0843
P type cation (metal) transporter, ATPase component.
 
  
 0.698
adhC
Alcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  
 0.690
adhC-2
Alcohol dehydrogenase.
  
  
 0.690
Atu1476
Esterase D; Serine hydrolase involved in the detoxification of formaldehyde.
  
  
 0.660
Atu0937
Copper transporting ATPase.
  
  
 0.646
Atu2002
Esterase/lipase.
  
  
 0.610
Atu0888
Transcriptional regulator, MerR family.
     
 0.575
Atu0889
Hypothetical protein.
       0.535
soxR
Transcriptional regulator, MerR family.
      
 0.491
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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