Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu0893ABC transporter, nucleotide binding/ATPase protein. (365 aa)    
Predicted Functional Partners:
Atu0894
ABC transporter, membrane spanning protein.
 
 0.997
Atu2280
ABC transporter, membrane spanning protein (proline/glycine betaine).
 
 0.979
proW
ABC transporter, membrane spanning protein (proline/glycine betaine).
 
 0.979
Atu3954
ABC transporter, membrane spanning protein.
 
 0.979
Atu3955
ABC transporter, membrane spanning protein.
 
 0.979
Atu4045
ABC transporter, membrane spanning protein (glycine betaine).
 
 0.979
Atu0895
ABC transporter, substrate binding protein.
 
 
 0.918
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
 
 
 0.889
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
 
 
 0.868
Atu4046
ABC transporter, substrate binding protein (glycine betaine).
 
 
 0.855
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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