Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu0895ABC transporter, substrate binding protein. (336 aa)    
Predicted Functional Partners:
Atu0894
ABC transporter, membrane spanning protein.
 
 0.949
proX
ABC transporter, substrate binding protein (proline/glycine betaine).
  
  
 
0.922
Atu4045
ABC transporter, membrane spanning protein (glycine betaine).
 
 0.921
Atu0893
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.918
Atu4046
ABC transporter, substrate binding protein (glycine betaine).
  
  
 
0.902
Atu2060
ABC transporter, substrate binding protein (glycine betaine).
     
 0.901
Atu2281
ABC transporter, substrate binding protein (proline/glycine betaine).
     
 0.901
Atu3957
ABC transporter, substrate binding protein (glycine-betaine).
     
 0.901
Atu4647
Conserved hypothetical protein.
     
 0.901
proW
ABC transporter, membrane spanning protein (proline/glycine betaine).
 
 0.885
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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