Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0898Conserved hypothetical protein. (133 aa)    
Predicted Functional Partners:
Atu2381
Conserved hypothetical protein.
  
     0.669
Atu0728
Conserved hypothetical protein.
  
     0.657
Atu8177
Conserved hypothetical protein.
  
     0.646
Atu0900
Conserved hypothetical protein.
 
     0.602
Atu0730
Conserved hypothetical protein.
  
     0.590
Atu2064
Conserved hypothetical protein.
  
   
 0.587
Atu2166
Conserved hypothetical protein.
  
     0.575
Atu3708
Outer surface protein.
  
     0.566
Atu1653
Conserved hypothetical protein.
  
     0.563
Atu0788
Conserved hypothetical protein.
  
     0.550
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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