STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0900Conserved hypothetical protein. (248 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.699
Atu0898
Conserved hypothetical protein.
 
     0.602
Atu0728
Conserved hypothetical protein.
  
     0.590
Atu3312
Conserved hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
 
   
 0.566
agpT
Transcriptional regulator, AraC family.
  
     0.550
Atu0730
Conserved hypothetical protein.
  
     0.524
ada
6-O-methylguanine-DNA methyltransferase.
       0.509
agpA
ABC transporter, substrate binding protein (alpha-galactoside).
  
     0.508
Atu0111
Conserved hypothetical protein.
  
     0.496
Atu2534
Outer membrane protein.
  
     0.469
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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