STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0903Conserved hypothetical protein. (286 aa)    
Predicted Functional Partners:
Atu4003
Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
    
 0.912
Atu0802
Conserved hypothetical protein.
  
  
 
0.910
Atu1045
Conserved hypothetical protein.
 
  
 0.669
Atu0902
Conserved hypothetical protein.
       0.582
Atu2307
Monooxygenase.
  
    0.575
Atu1102
Conserved hypothetical protein.
 
    0.531
Atu1013
Ferredoxin reductase.
      
 0.529
Atu3979
Dioxygenase.
 
    0.525
Atu2453
Aromatic compounds dioxygenase.
 
    0.515
Atu1516
Conserved hypothetical protein.
     
 0.512
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.