Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0922Conserved hypothetical protein. (118 aa)    
Predicted Functional Partners:
Atu1051
Conserved hypothetical protein.
  
     0.681
Atu8087
Putative peptidoglycan binding protein.
 
     0.670
Atu0376
Conserved hypothetical protein.
  
     0.624
Atu1573
Hypothetical protein.
  
     0.623
ialB
Invasion associated locus B.
  
     0.606
Atu1356
Conserved hypothetical protein.
  
     0.598
Atu1745
Conserved hypothetical protein.
  
     0.598
Atu3331
Conserved hypothetical protein.
  
     0.593
Atu0488
Conserved hypothetical protein.
  
     0.590
Atu1056
Conserved hypothetical protein.
  
     0.590
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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