Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0925Conserved hypothetical protein. (182 aa)    
Predicted Functional Partners:
Atu0926
Conserved hypothetical protein.
 
     0.972
Atu3780
Conserved hypothetical protein.
  
     0.768
Atu1056
Conserved hypothetical protein.
  
     0.767
Atu0806
Conserved hypothetical protein.
  
     0.753
Atu0788
Conserved hypothetical protein.
  
     0.745
Atu0488
Conserved hypothetical protein.
  
     0.744
Atu8095
Conserved hypothetical protein.
  
     0.743
Atu0652
Conserved hypothetical protein.
  
     0.742
Atu1745
Conserved hypothetical protein.
  
     0.733
Atu3708
Outer surface protein.
  
     0.731
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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