Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu0946Dehydrogenase. (366 aa)    
Predicted Functional Partners:
Atu0947
Transcriptional regulator, AsnC family.
 
     0.893
Atu4153
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.629
Atu3269
ABC transporter, substrate binding protein (dipeptide).
  
     0.512
folE
GTP cyclohydrolase I.
   
   0.478
Atu2782
Acetyltransferase.
   
  
 0.472
Atu2783
Acetyltransferase.
   
  
 0.472
Atu4029
Gluconolactonase precursor.
   
  
 0.468
Atu0990
NAD/NADP dependent oxidoreductase.
      
 0.460
glpD
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
      
 0.457
rbsA
ABC transporter, nucleotide binding/ATPase protein (ribose).
      
 0.455
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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