Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gp34Phage head portal protein. (388 aa)    
Predicted Functional Partners:
gp36
Phage phi-C31 major capsid gp36-like protein.
 
 
 0.968
Atu0964
Conserved hypothetical protein.
 
 
   0.934
Atu0965
Conserved hypothetical protein.
 
   0.934
Atu0967
Conserved hypothetical protein.
 
 
   0.934
gp35
Phage prohead protease.
 
   
 0.902
Atu0959
Hypothetical protein.
 
 
   0.887
Atu0966
Conserved hypothetical protein.
 
  
 0.841
Atu8178
Conserved hypothetical protein.
 
 
 
 0.832
Atu0951
Large terminase phage packaging protein.
 
    0.824
Atu8141
Conserved hypothetical protein.
 
  
 0.818
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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