STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gp34Phage head portal protein. (388 aa)    
Predicted Functional Partners:
gp36
Phage phi-C31 major capsid gp36-like protein.
 
 
 0.952
Atu0965
Conserved hypothetical protein.
 
   0.910
Atu0964
Conserved hypothetical protein.
 
 
   0.909
Atu0967
Conserved hypothetical protein.
 
 
   0.909
gp35
Phage prohead protease.
 
   
 0.887
Atu0959
Hypothetical protein.
 
 
   0.844
Atu8178
Conserved hypothetical protein.
 
 
 0.833
Atu0966
Conserved hypothetical protein.
 
    0.829
Atu8141
Conserved hypothetical protein.
 
  
 0.810
Atu0951
Large terminase phage packaging protein.
 
    0.807
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.