Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu0996Zinc-binding dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (338 aa)    
Predicted Functional Partners:
Atu0997
Conserved Hypothetical Protein.
 
   
 0.687
Atu4416
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
    
   0.534
Atu3675
Peptide synthetase, siderophore biosynthesis protein.
  
  
 0.515
Atu3672
Polyketide synthase, siderophore biosynthesis protein.
  
 
 0.501
bacA-2
Undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.475
impM
Serine/threonine phosphoprotein phosphatase.
   
   0.473
Atu3673
Siderophore biosynthesis protein.
  
 
 0.461
mutA
methylmalonyl-CoA mutase.
     
 0.419
Atu3072
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.410
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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