Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1009Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
Atu0606
Conserved hypothetical protein.
  
     0.638
Atu2246
Conserved hypothetical protein.
  
     0.625
Atu8188
Conserved hypothetical protein.
  
     0.569
Atu1351
Conserved hypothetical protein.
  
     0.542
Atu1008
Conserved hypothetical protein.
       0.505
Atu1055
Conserved hypothetical protein.
  
     0.504
Atu8189
Hypothetical protein.
  
    0.461
fadL
Long-chain fatty acid transport protein.
 
    0.459
Atu1877
OmpA family protein.
  
     0.459
Atu2133
Conserved hypothetical protein.
  
     0.432
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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