STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1009Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
Atu0606
Conserved hypothetical protein.
  
     0.638
Atu2246
Conserved hypothetical protein.
  
     0.625
Atu8188
Conserved hypothetical protein.
  
     0.569
Atu1351
Conserved hypothetical protein.
  
     0.542
Atu1055
Conserved hypothetical protein.
  
     0.504
Atu1008
Conserved hypothetical protein.
       0.500
Atu1877
OmpA family protein.
  
     0.459
Atu8189
Hypothetical protein.
  
    0.443
Atu2133
Conserved hypothetical protein.
  
     0.432
fadL
Long-chain fatty acid transport protein.
 
    0.428
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.