Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1038Two component response regulator. (125 aa)    
Predicted Functional Partners:
Atu1987
Two component response regulator.
  
     0.772
Atu4164
Two component sensor kinase.
 
   
 0.743
Atu4163
Two component sensor kinase.
 
   
 0.688
Atu1988
Two component sensor kinase.
 
   
 0.684
fixK
Nitrogen fixation regulatory protein.
 
     0.669
Atu4162
Two component response regulator.
  
   
 0.624
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.598
Atu0495
Conserved hypothetical protein.
  
     0.474
Atu3721
Hypothetical protein.
  
     0.471
Atu4047
Two component sensor kinase/response regulator hybrid.
     
 0.456
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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