Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu1046ABC transporter, substrate binding protein. (347 aa)    
Predicted Functional Partners:
Atu1048
ABC transporter, membrane spanning protein.
 
 
 0.915
Atu1047
ABC transporter, nucleotide binding/ATPase protein.
 
 
 0.914
Atu4597
ABC transporter, membrane spanning protein.
 
 
 0.658
Atu2390
ABC transporter, membrane spanning protein.
 
   0.636
Atu2389
ABC transporter, membrane spanning protein.
 
 
 0.624
Atu4155
ABC transporter, membrane spanning protein (aliphatic sulphonate).
  
 
 0.608
Atu3286
ABC transporter, membrane spanning protein.
 
   0.595
Atu1045
Conserved hypothetical protein.
 
     0.550
Atu4260
ABC transporter, membrane spanning protein.
 
 
 0.550
Atu0158
ABC transporter, membrane spanning protein.
 
 
 0.543
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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