Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1047ABC transporter, nucleotide binding/ATPase protein. (251 aa)    
Predicted Functional Partners:
Atu1048
ABC transporter, membrane spanning protein.
 
 
 0.985
Atu1046
ABC transporter, substrate binding protein.
 
 
 0.914
Atu0158
ABC transporter, membrane spanning protein.
 
 
 0.836
nrtB
ABC transporter, membrane spanning protein (nitrate).
 
 
 0.825
Atu4597
ABC transporter, membrane spanning protein.
 
 
 0.816
Atu4260
ABC transporter, membrane spanning protein.
 
 
 0.779
Atu0157
ABC transporter, substrate binding protein.
 
 
 0.761
Atu4155
ABC transporter, membrane spanning protein (aliphatic sulphonate).
 
 
 0.737
Atu3286
ABC transporter, membrane spanning protein.
 
 
 0.734
Atu4596
Conserved hypothetical protein.
 
 
 0.699
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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