STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1064ABC transporter, nucleotide binding/ATPase protein. (628 aa)    
Predicted Functional Partners:
Atu2150
ABC transporter, nucleotide binding/ATPase protein; Belongs to the ABC transporter superfamily.
 
     
0.608
Atu8147
Conserved hypothetical protein.
       0.581
Atu3744
ABC transporter, nucleotide binding/ATPase protein.
  
 
0.540
Atu2241
ABC transporter, nucleotide binding/ATPase protein.
  
 
0.539
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.534
dnaK
DNAK Protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
   
 0.530
Atu4600
ABC transporter, nucleotide binding/ATPase protein.
  
 
0.530
Atu2242
ABC transporter, nucleotide binding/ATPase protein.
  
 
0.528
Atu3513
Methyltransferase.
  
     0.526
chvA
Beta (1-->2) glucan export ATP-binding protein; Involved in beta-(1-->2)glucan export which is required for crown gall tumor formation. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).
  
 
0.524
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
Server load: low (26%) [HD]