STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1115Two component sensor kinase. (553 aa)    
Predicted Functional Partners:
nwsB
Two component response regulator.
 
 
 0.953
Atu1117
Conserved hypothetical protein.
 
   
 0.786
Atu2332
Two component sensor kinase/response regulator hybrid.
 
 
 0.761
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.740
Atu0700
Two component sensor kinase.
 
 
 0.689
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
0.664
Atu0921
Two component sensor kinase.
  
 
 
 0.659
Atu0419
Two component sensor kinase.
 
 
 
 0.649
Atu1986
Two component sensor kinase.
 
 
 0.612
dctD-2
Two component response regulator for C4-dicarboxylate transport.
 
 
 0.607
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.