STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1119Conserved hypothetical protein. (320 aa)    
Predicted Functional Partners:
Atu1114
GGDEF family protein.
 
  
 0.820
Atu2197
Conserved hypothetical protein.
 
  
 0.817
Atu2291
Conserved hypothetical protein.
  
 
 0.751
Atu1118
ABC transporter, nucleotide binding/ATPase protein.
       0.603
Atu0784
Conserved hypothetical protein.
 
 
0.552
Atu4692
GGDEF family protein.
 
 
0.507
Atu4047
Two component sensor kinase/response regulator hybrid.
 
 
 0.503
Atu4490
GGDEF family protein.
 
  
0.481
Atu2332
Two component sensor kinase/response regulator hybrid.
 
 
 0.465
Atu3207
GGDEF family protein.
 
  
0.463
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.