STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1125ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. (298 aa)    
Predicted Functional Partners:
Atu1411
ABC transporter, nucleotide binding/ATPase protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.944
Atu2426
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.927
Atu2425
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.917
braC
ABC transporter, substrate binding protein (branched chain amino acid).
 
  
 0.871
Atu2422
ABC transporter, substrate binding protein (amino acid).
 
  
 0.871
livG
ABC transporter, nucleotide binding/ATPase protein (branched chain amino acid).
 
  
 0.866
livM
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.864
Atu4127
ABC transporter, membrane spanning protein (branched chain amino acid); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.842
Atu2424
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.830
Atu1410
ABC transporter, nucleotide binding/ATPase protein.
 
  
 0.829
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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