STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1195Heavy-metal transporting P-type ATPase. (836 aa)    
Predicted Functional Partners:
cueR-2
Transcriptional regulator, MerR family.
 
  
 0.821
Atu1196
Naphthalene 1,2-dioxygenase.
 
   
 0.804
Atu1203
Hypothetical protein.
 
 
 0.739
Atu0843
P type cation (metal) transporter, ATPase component.
 
 
0.687
Atu0937
Copper transporting ATPase.
  
 
 0.598
nikB
ABC transporter, membrane spanning protein.
       0.521
dppC
ABC transporter, membrane spanning protein.
       0.521
cueR
Transcriptional regulator, MerR family.
 
  
 0.452
fixS
Nitrogen fixation protein FixS.
  
  
 0.407
ribD*
Bifunctional riboflavin deaminase-reductase.
  
    0.405
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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