Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1237Glycosyl transferase. (393 aa)    
Predicted Functional Partners:
gumB
Polysaccharide export protein.
 
  
 0.904
Atu1235
Conserved hypothetical protein.
 
  
 0.894
exoP
Exopolysaccharide production protein.
 
  
 0.885
Atu1236
Polysaccharide biosynthesis glycosyltransferase.
 
  
 0.874
Atu3523
Polysaccharide biosynthesis associated protein.
 
  
 0.821
Atu1240
Conserved hypothetical protein.
 
     0.756
Atu3860
Conserved hypothetical protein.
 
  
 0.740
Atu8163
Conserved hypothetical protein.
  
     0.708
Atu0926
Conserved hypothetical protein.
  
     0.608
Atu1056
Conserved hypothetical protein.
  
     0.587
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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