Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu1357Conserved hypothetical protein. (492 aa)    
Predicted Functional Partners:
Atu1356
Conserved hypothetical protein.
 
  
 0.994
Atu1358
Conserved hypothetical protein.
       0.665
Atu1355
Conserved hypothetical protein.
       0.656
mepA
Penicillin-insensitive murein endopeptidase.
  
     0.647
Atu3331
Conserved hypothetical protein.
  
     0.601
Atu0845
Conserved hypothetical protein.
  
     0.600
Atu0048
Conserved hypothetical protein.
  
     0.590
ialB
Invasion associated locus B.
  
     0.579
Atu0844
Conserved hypothetical protein.
  
     0.577
Atu3763
Conserved hypothetical protein.
  
     0.515
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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