Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Atu1387Transcriptional regulator, GntR family. (236 aa)    
Predicted Functional Partners:
Atu1388
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
       0.864
Atu3961
Transcriptional regulator, GntR family.
  
     0.767
Atu1419
Transcriptional regulator, GntR family.
  
     0.757
Atu0791
Transcriptional regulator, GntR family.
  
     0.750
Atu4674
Transcriptional regulator, GntR family.
  
     0.746
Atu2821
Transcriptional regulator, GntR family.
  
    0.672
Atu1788
Transcriptional regulator, GntR family.
  
    0.664
Atu4624
Transcriptional regulator, GntR family.
  
    0.653
exuR
Transcriptional regulator, GntR family.
  
    0.651
Atu3226
Transcriptional regulator, GntR family.
  
    0.636
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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