STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu1389ABC transporter, membrane spanning protein. (223 aa)    
Predicted Functional Partners:
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
   0.968
Atu1388
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.922
Atu1390
ABC transporter, membrane spanning protein.
 
  
 
0.901
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.899
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
   0.840
Atu4690
ABC transporter, nucleotide binding/ATPase protein (amino acid).
   0.830
Atu1399
ABC transporter, substrate binding protein (amino acid).
  
   0.812
Atu4534
ABC transporter, substrate binding protein (amino acid).
  
   0.812
Atu4687
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
  
   0.812
Atu4535
ABC transporter, substrate binding protein (amino acid).
  
   0.810
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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