Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Atu1390ABC transporter, membrane spanning protein. (219 aa)    
Predicted Functional Partners:
Atu1391
ABC transporter, nucleotide binding/ATPase protein.
 
   0.981
Atu1388
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
   0.942
Atu1389
ABC transporter, membrane spanning protein.
 
  
 
0.942
Atu1879
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
 
   0.891
Atu1396
ABC transporter, nucleotide binding/ATPase protein.
 
   0.833
Atu4690
ABC transporter, nucleotide binding/ATPase protein (amino acid).
 
   0.820
Atu1399
ABC transporter, substrate binding protein (amino acid).
  
   0.804
Atu4534
ABC transporter, substrate binding protein (amino acid).
  
   0.803
Atu4687
ABC transporter, substrate binding protein (amino acid); Belongs to the bacterial solute-binding protein 3 family.
  
   0.803
Atu4535
ABC transporter, substrate binding protein (amino acid).
  
   0.801
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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